Monday, 7 May 2012

Secular Café: Scientific Revolutions: Overthrowing or Encompassing?

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Scientific Revolutions: Overthrowing or Encompassing?
May 7th 2012, 07:28

Correspondence in Cosmology by Nancy Ellen Abrams and Joel R. Primack
Abstract:
Quote:

The claim of Thomas Kuhn that scientific revolutions overthrow preceding theories is only true in the early stages of a science, as illustrated by the Copernican revolution. Once a field has established a fundamental theory, for example Newtonian mechanics, that theory is usually encompassed rather than overthrown by a broader theory that reduces to (i.e., makes the same predictions as) the older theory in appropriate circumstances. The old, encompassed theory then represents the highest grade of truth possible in science, within the limited arena in which its predictions agree with those of the encompassing theory. Physics is searching for a theory that can encompass relativity and quantum theory, not overthrow them. The Big Bang cosmology has encompassed the Newtonian solar system. Inflationary Cold Dark Matter cosmology, our most promising theory today to encompass the Big Bang, challenges us to reassess our human role in light of the new metaphors and visions of our highly counter-intuitive universe. Religions might make moral progress by adopting the scientific model of "encompassing revolutions" and opening to the realization that a larger picture of reality could respectfully encompass the wisdom of their tradition without threatening it.
This is a response to Thomas Kuhn's Structure of Scientific Revolutions. In that book, he famously argued that the progress of science involves the overthrow of old paradigms and the establishment of new ones. He famously argued that old and new paradigms are "incommensurable", meaning that they cannot be compared to each other. This suggests that the progress of science is little better than one fashion replacing another one.

NEA and JRP responded by arguing that overthrows usually happen only in the early stages of some scientific field, that later paradigm shifts are due to a new paradigm encompassing or subsuming another paradigm. The old ones then become special cases of the new ones, like limiting cases or emergent effects. Isaac Asimov had made a similar point in Asimov - The Relativity of Wrong.

I think that they are correct. One can list oodles of examples. One of my favorite ones is Newtonian vs. Einsteinian mechanics (relativity). Newtonian mechanics is in error by an amount that's approximately (v/c)2, where v is a typical velocity and c is the speed of light in a vacuum, which might be called the Einstein speed.

As to religion, some long-running religious traditions have handled new sacred books in a similar way, treating them as additions to their predecessors' sacred books.

In the Abrahamic religions, Judaism started out with the Tanakh / Hebrew Bible / Old Testament. Xianity added the New Testament, Islam the Koran, and Bahaism The Most Holy Book (Kitab-i-Aqdas).

All of them make connections to their predecessors. The New Testament presents Jesus Christ as being the Messiah prophesied in the Old Testament, complete with descent from King David. Islamic tradition presents Mohammed as having had lots of predecessor prophets, like Abraham, Moses, Alexander the Great, and Jesus Christ. Bahaism goes even further, recognizing them all as predecessors of Baha'u'llah, along with Zoroaster and Krishna.

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Saturday, 5 May 2012

Secular Café: How to deal with "pest" monkeys

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
How to deal with "pest" monkeys
May 6th 2012, 06:42

In the end, they are being turned into pests as a result of human behaviour. Should the people be educated to be tolerant of them and correct the underlying problems which are caused by humans?

http://www.bbc.co.uk/nature/17937851

Quote:

As with primate groups the world over, human pressures through habitat destruction and encroachment via population growth are the biggest threats to the survival of Sri Lanka's toque macaques, Dr Dittus believes.


Ever-expanding towns and cities and the rubbish they produce, as well as the conversion of forest to agricultural land growing crops bring the macaques into conflict with people.

Macaques are adaptable, and many have learnt to exploit these new resources, raiding rubbish tips, gardens and houses.

As a result, the government in Sri Lanka has recently classed toque macaques as pests, allowing people to "kill them at will", according to Dr Dittus.

Wildlife authorities in the area are also attempting to alleviate the problem by translocating what he describes as "streetwise thug monkeys" from towns and cities into remote areas.

This just passes on the problem, causing new conflicts in rural villages, where monkeys and people have historically lived in relative peace.

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Thursday, 3 May 2012

Secular Café: Human Intelligence due to evolutionary accident?

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Human Intelligence due to evolutionary accident?
May 4th 2012, 02:22

Quote:

New Clues to the Evolution of the Human Brain
Gene event 2.5 million years ago may explain why humans are smarter than great apes, researchers say

May 3, 2012

THURSDAY, May 3 (HealthDay News) -- New research suggests that a partial duplication of a gene played a significant role in a major advance in human brain evolution that occurred a few million years ago.

The SRGAP2 gene has been duplicated at least twice during human evolution, first about 3.5 million years ago and again about 2.5 million years ago. The second duplication produced only a partial copy of the gene, the study authors said.

This partial copy acts at exactly the same time and place as the original gene, allowing the partial copy to interact with and block the original gene's function, according to the findings published online May 3 in the journal Cell.

The partial copy of the SRGAP2 gene seems to have appeared at the same time that the fossil records show a transition from our extinct Australopithecus ancestors to the genus Homo, which led to and includes modern humans.

This point in human evolution is also when our ancestors' brains began to expand and major advances in intelligence likely occurred, according to Franck Polleux, an expert in brain development at Scripps Research Institute in La Jolla, Calif., and Evan Eichler, a genome scientist at the University of Washington in Seattle.
....
http://health.usnews.com/health-news...he-human-brain

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Secular Café: Alternative explanation to our connection with neanderthalls

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Alternative explanation to our connection with neanderthalls
May 3rd 2012, 20:09

Just reading an article from New Scientist and discovered that although DNA evidence suggests that all humans outside of Africa have between 1 and 4% Neanderthall DNA this does not have to mean that we interbred with Neaderthals. An alternative explanation is that two groups evolved in Africa and one left to evolve into both Neaderthals and modern humans. Here is the description from the article.

"But there is an alternative explanation for the presence of Neanderthal DNA in the human genome. Imagine that ancient hominin populations in Africa, each with a slightly different genetic makeup, were separated from one another. If one group gave rise to all the hominins that lived outside Africa, while other populations became the ancestors of all Africans, then even without subsequent interbreeding the non-African and Neanderthal populations would share some DNA that African populations would lack. This possibility was mentioned by Green and colleagues in their original paper and has been explored further by Andrea Manica at the University of Cambridge, who believes that it could explain the distribution pattern of Neanderthal genes found today."

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Secular Café: Astrobites - Stars and Planets

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Astrobites - Stars and Planets
May 3rd 2012, 14:17

Courtney Dressing of Astrobites has recently blogged about some stuff related to stars and planets.

Star Hoppers: Planets in Evolving Binary Star Systems | astrobites
reporting on Star Hoppers and [1204.2014] Star Hoppers: Planet Instability and Capture in Evolving Binary Systems
What happens to a planet when its primary becomes a red giant? The star may swallow the planet, but the star may also lose enough mass to push the planet's orbit outward. If it happens slowly enough, the orbit's eccentricity and orientation will be unaffected, but its major axis will increase in inverse proportion to the star's mass:
a ~ 1/M

But if the planet was orbiting one star of a binary system, it may get pushed out to the unstable region around the stars, halfway between orbiting one star and orbiting both of them. It may then run into one of the stars or enter a stable orbit around the second one. The latter case happens about 10% of the time.

How to Build a Low-Density Super-Earth | astrobites
reporting on [1204.5302] In-situ Accretion of Hydrogen-Rich Atmospheres on Short-Period Super-Earths: Implications for the Kepler-11 Planets
It can collect hydrogen and helium from the surrounding nebula, thus giving it a super atmosphere, and thus explaining the large sizes of some of the planets observed by the Kepler spacecraft. In our Solar System, Uranus and Neptune may have done likewise.

The Invisible Monster Has Two Faces | astrobites
reporting on [1202.6643] The Invisible Monster Has Two Faces: Observations of Epsilon Aurigae with the Herschel Space Observatory
The star Epsilon Aurigae dims from apparent magnitude +3 to +4 for about 2 years every 27.1 years.
Quote:

Today we know that the ε Aurigae binary star system is located 625 parsecs away and consists of a 2.2 solar mass post-asymptotic giant branch (evolved) F-star and a 5.9 solar mass main-sequence B dwarf with an orbital period of 27.1 years. The B dwarf is surrounded by a large dust disk, but astronomers are still working to constrain the disk properties. As the two stars orbit each other, astronomers on Earth are able to observe different regions of the dust disk surrounding the B dwarf. When the B dwarf passes in front of the F star during primary eclipse, astronomers are able to study the cool back side of the dust disk on the side of the B dwarf opposite the F star. Astronomers can study the warmer front side of the dust disk by observing the system at opposition when the B dwarf lies on the far side of the F star.
Signposts of Planet Formation & Destruction | astrobites
reporting on [1201.3622] Debris disks as signposts of terrestrial planet formation. II Dependence of exoplanet architectures on giant planet and disk properties
and [1104.0007] Debris disks as signposts of terrestrial planet formation
Or, Giant Planets vs. All the Others.

Sean Raymond et al. did a lot of planetary-formation number crunching, and they showed that giant planets can give each other big eccentricities, and can even eject some of them. When they do that, they can clear out many or all of the smaller planets and much or all of the debris disks.

So the authors propose that debris disks without giant planets are good places to look for Earthlike planets.

This sort of orbital instability can explain why some exoplanets are observed to have very high eccentricities, sometimes close to 1. It may also explain the high eccentricities of the orbits of some binary stars.

For planets, I've found the Exoplanet Orbit Database | Exoplanet Data Explorer. The champion eccentricity so far is about 0.93, for HD 80606 b and HD 20782 b. Both planets orbit stars that are much like the Sun, and scaling from 298 K at 1 AU,
Planet Min M Per Min d Avg d Max d Max T Avg T Min T
HD 80606 b 4 MJup 110 d 0.03 AU 0.45 AU 0.87 AU 710 K 360 K 310 K
HD 20782 b 2 MJup 590 d 0.10 AU 1.36 AU 2.62 AU 540 K 280 K 230 K

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Wednesday, 2 May 2012

Secular Café: Virus Epidemic Within Our Genome Revealed

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Virus Epidemic Within Our Genome Revealed
May 2nd 2012, 10:12

Very interesting article/research but I'm hating that they have started using "dark matter" to refer to unknown DNA sequences.

Quote:

Virus Epidemic Within Our Genome Revealed

ScienceDaily (May 1, 2012) — Scientists from Oxford University have uncovered clues as to how mammal genomes became riddled with viruses. The research, supported by the Wellcome Trust, reveals important information about the so-called 'dark matter' of the human genome.

For years scientists have been struggling with the enigma that more than 90 percent of every mammal's genome has no known function. A part of this 'dark matter' of genetic material is known to harbour pieces of DNA from ancient viruses that infected our ancestors going back as far as the age of the dinosaurs.

Researchers at Oxford University, the Aaron Diamond AIDS Research Center in New York, and the Rega Institute in Belgium wanted to know how these ancient viruses got into their hosts' genomes in such abundance.

The team searched the genomes of 38 mammals covering a large range of species: from mouse, rat and bat to human, elephant and dolphin. Genetic material from all of the residing viruses was collected and then compared using mathematical models.

The findings revealed that one particular group of viruses had lost the ability to infect new cells. Their genetic material is still able to amplify itself but the whole lifecycle of the virus is passed within a single cell: this change, they found, was followed by a dramatic proliferation of viral genetic material within the genomes.

A comparison with all of the other viruses in the genomes revealed this to be a universal phenomenon, and that loss of cell infectivity is associated with a roughly 30-fold increase in the abundance of the virus.

The pattern resembles that which we see during epidemic outbreaks, whereby a small proportion of infected people are often responsible for most of the spread of an infectious agent to the rest of the population. They are described as 'superspreaders'.
....
http://www.sciencedaily.com/releases...0501210558.htm

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Secular Café: Automated Spacecraft vs. Astronauts?

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Automated Spacecraft vs. Astronauts?
May 2nd 2012, 08:25

Skepticblog » Why the US Can't Get Astronauts Into Space
From sapceman's comment in the middle of the page, I found
Dispelling the Myth of Robotic Efficiency: Why Astronomers Should Support Human Exploration of the Solar System | astrobites
It discussed [1203.6250] Dispelling the myth of robotic efficiency: why human space exploration will tell us more about the Solar System than will robotic exploration alone
Quote:

There is a widely held view in the astronomical community that unmanned robotic space vehicles are, and will always be, more efficient explorers of planetary surfaces than astronauts (e.g. Coates, 2001; Clements 2009; Rees 2011). Partly this is due to a common assumption that robotic exploration is cheaper than human exploration (although, as we shall see, this isn't necessarily true if like is compared with like), and partly from the expectation that continued developments in technology will relentlessly increase the capability, and reduce the size and cost, of robotic missions to the point that human exploration will not be able to compete. I will argue below that the experience of human exploration during the Apollo missions, more recent field analogue studies, and trends in robotic space exploration actually all point to exactly the opposite conclusion.
Courtney Dressing of Astrobites reproduces some of the figures in that paper.

One of them shows curves of how many papers have been published about the results of various lunar missions. The Apollo ones have about 5 times as many as the other ones combined.

That's due to the much larger volume of rocks that the Apollo astronauts had returned with, their greater variety, and various instruments that those astronauts had left on the Moon. That was partly because the astronauts needed to have big spacecraft to keep them alive and to transport them. That great size enabled lots of rocks and instruments to travel with the astronauts.

The downside was that the Apollo program is MUCH more expensive than its automated competition, and that it was supported by Cold-War beat-the-Russians one-upmanship. After it succeeded in beating the Russians to the Moon, a lot of its motivation evaporated, and the last three planned Apollo missions were never flown.

The Russians, for their part, were trying to beat the Americans to the Moon, but they failed miserably, and they later claimed that they were never in the race.

As to astronauts going to Mars, I really don't see it happening any time soon. Just about every spacecraft sent there so far has been sent on some approximation of a Hohmann Transfer Orbit, an orbit with the minimum possible velocity change between a starting and an ending circular orbit. The Earth is at the orbit's closest distance from the Sun, and Mars is at the orbit's farthest distance. This requires that the Earth and Mars have certain relative positions, something that happens about every 2 years. Going to Mars takes about 9 months, one has to stay at Mars for about an Earth year before the two planets have good relative positions for returning, and returning takes another 9 months. That adds up to 2 1/2 (Earth) years.

However, human astronauts have demonstrated much greater dexterity than automated spacecraft, even when wearing spacesuits. For Mars, the round-trip time for radio communication is about 30 minutes, meaning that spacecraft controllers have to work out detailed instructions and radio those instructions to their spacecraft.

Human astronauts also have MUCH better visual recognition than automated spacecraft. Automated vision is still in a rather primitive state, though it has gotten a lot of industrial application for inspections and the like.

Here's a comparison of advantages and disadvantages:

Some of those assessments are rather grotesquely wrong.

Strength? Don't make me laugh. Try a tug-of-war with a car some time.

Endurance? Automated spacecraft can be continuously active, and they can easily survive environments that will quickly kill us.

Perception? We are good at recognizing patterns, and AI is rather far behind there. However, automated spacecraft can and do have a much wider range of "senses".

It didn't talking about powering, and we are FAR behind there. We can't power ourselves by plugging ourselves into an electrical outlet, for instance. We need food, and chemically-complicated food at that. Complete with several kinds of food materials whose molecules would be useless for us if they got even slight rearrangements. I envy fungi and bacteria; some of them can subsist on a much more limited selection.

Manufacturing them would be difficult and inefficient without catalysts that are very shape-sensitive. But there do exist such catalysts, and several of them were "invented" over 3 billion years ago: enzymes. However, eating organisms requires much more food-organism biomass than human-flesh biomass, which means an even bigger spacecraft.

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