Tuesday 19 June 2012

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Monday 18 June 2012

Secular Café: Could the Standard Model be wrong?

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Could the Standard Model be wrong?
Jun 19th 2012, 01:20

Quote:

Misbehaving particles poke holes in reigning physics theory
Scientists find decay happens more often than Standard Model predicts — so now what?



The reigning theory of particle physics may be flawed, according to new evidence that a subatomic particle decays in a certain way more often than it should, scientists announced.

This theory, called the Standard Model, is the best handbook scientists have to describe the tiny bits of matter that make up the universe. But many physicists suspect the Standard Model has some holes in it, and findings like this may point to where those holes are hiding.

Inside the BaBar experiment at the SLAC National Accelerator Laboratory in Menlo Park, Calif., researchers observe collisions between electrons and their antimatter partners, positrons (scientists think all matter particles have antimatter counterparts with equal mass but opposite charge). When these particles collide, they explode into energy that converts into new particles. These often include so-called B-bar mesons, which are made of both matter and antimatter, specifically a bottom quark and an antiquark. If that wasn't too much of a headache, this process has the impenetrable moniker "B to D-star-tau-nu."

The BaBar researchers were looking for a particular decay process where B-bar mesons decay into three other particles: a D meson (a quark and an antiquark, one of which is "charm" flavored ), an antineutrino (the antimatter partner of the neutrino) and a tau lepton (a cousin of an electron). [ Graphic: Nature's Tiniest Particles Explained ]

What they found is that this process apparently happens more often than the Standard Model predicts it will.

"The excess over the Standard Model prediction is exciting," BaBar spokesperson Michael Roney of the University of Victoria in Canada said in a statement. "But before we can claim an actual discovery, other experiments have to replicate it and rule out the possibility this isn't just an unlikely statistical fluctuation."
...
http://www.msnbc.msn.com/id/47866307.../#.T9_S0PWePw0

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Secular Café: Woo About Curing Autism Via Drinking Bleach/Bleace Enemas

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Woo About Curing Autism Via Drinking Bleach/Bleace Enemas
Jun 19th 2012, 00:38

link

These people are fucking insane.

Quote:

The Phaelospher, it appears, is very unhappy with Mr. Drezner, very unhappy indeed, so much so that he wrote a post entitled The "MMS-is-Bleach" Card is Played… Again. Before we get to the "Fail-osopher," as skeptics like to call him, let's first go back to Mr. Drezner's HuffPo post and what brought it about. It was a hard-hitting article, and, certainly, I can't argue with Mr. Drezner's conclusion:


Let's state the obvious: There is no reason to give bleach to any child, for any reason. There is not a shred of scientific evidence that MMS is an effective treatment for autism. Some purveyors of quackery have spotted a lucrative market and are trying to take advantage of it. But their protocol is far closer to child abuse than it is to effective medical treatment.

Sadly, Autism One and those who attend it have had a very hard time recognizing these simple facts. In a post at Age of Autism, Julie Obradovic tries to defend MMS without actually defending it. Instead, she mentions that Autism One presenters included M.D.s, Ph.D.s, and a Nobel Laureate. But the presence of smart people at a conference that promotes quackery doesn't change the fact that it's promoting quackery.

Indeed, it does not, although I would point out to Mr. Drezner that this Nobel Laureate is a Nobel Laureate who has come down with the Nobel Disease. He's turned into a complete crank, endorsing homeopathy, appearing in an HIV/AIDS denialist movie, and starting up an unethical clinical trial of long-term antibiotic therapy for autistic children. In fact, it was that clinical trial that he came to Autism One to talk about, lending the aura of his Nobel Prize to the most wretched of quackfests.
...
Next, Mr. Abraham shares with us the story of a mother who claims to have gotten all sorts of worms out of her autistic child using Ms. Rivera's protocol, complete with pictures. Who knows if this child actually had worms, whether this is a legitimate medical anecdote or a made-up one? Let's say for the moment that it's legitimate. So what? Giving a child enemas of almost any kind would probably get worms out of the colon as they emerge from the small intestine if there are worms in the digestive tract. That doesn't mean that getting rid of worms will cure autism or that bleach enemas are even a good treatment for worms.

Finally, Mr. Abraham makes a most ridiculous analogy:


When we see pictures of children "fighting cancer" that have no hair, we think that the cancer condition caused the hair loss. However, the cancer treatment; the chemotherapy or radiation, actually did the deed. We are accustomed to rationalizing, at doctor's suggestion and all the "respected" literature on the subject, that it was okay because the cancer was so dangerous.

Even though it creates no residual chemical toxicity in the body, doctors will not use MMS, which has proven itself to be a benign and effective way to reduce a myriad of chemical abuses and microbial abnormalities inside the human body. Doctors will not use it because the FDA and the AMA frown upon such use. Livelihoods can be upset if this outlaw "bleach" as the FDA mis-characterizes the sodium chlorite solution that is MMS, is used.

That's right. Mr. Abraham is actually arguing that it's a double standard to criticize treating autism by making children sick by feeding them bleach and giving them bleach enemas while accepting the side effects of hair loss, nausea, and vomiting from cancer chemotherapy. This is an argument so brain dead that I don't think even his Genome Healing Workshop could restore the neurons that must have been destroyed to allow him to make it.

Last week, I asked this rhetorical question: Will the autism "biomed" underground ever renounce using bleach to treat autism? I'm still not sure of the answer, even though several of my readers have told me the answer is no. On the one hand, we have people like Julie Obradovic and the "media director" of the antivaccine crank blog Age of Autism furiously backpedaling and assuring us that they really and truly aren't defending MMS. Clearly, Rivera's appearance at Autism One three weeks ago embarrassed them. Actually, it wasn't her appearance per se, but rather that fact that the blogosphere noticed and spread the news of her quack presentation far and wide. On the other hand, they're also defending "freedom" to choose quackery like MMS and circling the wagons.
THIS is why I fucking hate woo. Some of it might be harmless, but a lot of it is far from being so.

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Secular Café: Aboriginal rock art is 28,000 years old

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Aboriginal rock art is 28,000 years old
Jun 19th 2012, 01:05

Quote:

Aboriginal rock art is 28,000 years old

(AFP) – 18 hours ago

SYDNEY — Aboriginal rock art found in remote Australia has been dated at 28,000 years old, experts said Monday, prompting new speculation that indigenous communities were among the world's most advanced.

Archaeologists picked up the fragment in inaccessible wilderness in Arnhem Land in the country's north a year ago, and recent carbon dating of its charcoal drawing has placed it among some of the oldest art on the planet.

"One of the things that makes this little fragment of art unique is that it is drawn in charcoal... which means we could directly date it," said Bryce Barker, who found and first analysed the granite rock.

Barker said given it was one of the oldest known pieces of rock art on earth, it showed that Aboriginal people were responsible for some of the earliest examples.

Barker said the find ranks among rock art sites such as France's Chauvet caves dated at older than 30,000 years and caves in northern Spain now thought to be 40,000 years old.

"The fact remains that any rock art that is older than 20,000 years is very unique around the world," said Barker, a professor at the University of Southern Queensland.

"So it makes this amongst some of the oldest art in the world.

"And we're convinced that we'll find older and the reason is that the site this comes from, we know that Aboriginal people started using this site 45,000 years ago."

The find was made at a massive rock shelter named Narwala Gabarnmang, which is covered on its ceiling and pillars with rock art, and only accessible by a 90 minute helicopter journey from the outback town of Katherine....
...
http://www.google.com/hostednews/afp...af131cc82cc.51

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Sunday 17 June 2012

Secular Café: Are We Driving Earth to an Irreversible Tipping Point?

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Are We Driving Earth to an Irreversible Tipping Point?
Jun 18th 2012, 00:43

Scary stuff!

Quote:

Are We Driving Earth to an Irreversible Tipping Point?

Nature changes gradually—until it doesn't. As the changes in an ecosystem pile up, they can push the system past a "critical threshold," and then the change can become extremely fast (in relation to geological timescales) and unstoppable. And in a review in the journal Nature, researchers suggest that the same thing is happening to the whole world: Humans could be driving Earth's biosphere towards a tipping point beyond which the planet's ecosystems will collapse abruptly and irreversibly.

This global ecosystem collapse has occurred before, most recently about 12,000 years ago with the last transition from a glacial period to the current interglacial (i.e., warm) period, say the review authors. Over the relatively short period of 1,000 years, fluctuations in the Earth's climate largely killed off about half the large mammal species, along with birds, reptiles, and a few smaller mammal species. The millennium-long shift was triggered by rapid global warming, and once this warming pushed the planet past its tipping point, the end of the 100,000-year-old ice age became inevitable, giving way to the current 11,000-year-old interglacial era.

Even as many Americans insist that we aren't affecting the environment, the paper's authors warn that man-made changes, such as loss of biodiversity, pollution, agriculture, climate change, and overuse of natural resources, are driving the planet toward another global tipping point. A few of these transformations, such as climate fluctuations and species extinction, also preceded earlier global critical transitions. And when scientists plug these transformations into ecosystem models, they quickly nudge systems past their tipping points.
...
http://blogs.discovermagazine.com/80...tipping-point/

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Secular Café: Why Nikola Tesla was the greatest geek the world has ever seen

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Why Nikola Tesla was the greatest geek the world has ever seen
Jun 17th 2012, 14:32

http://theoatmeal.com/comics/tesla




There's MUCH more at the full link....enjoy....

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Secular Café: This is great, Freud gets some props!

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
This is great, Freud gets some props!
Jun 17th 2012, 12:44

I've long thought he gets unfairly attacked and rejected.

Quote:

Freud's Theory of Unconscious Conflict Linked to Anxiety Symptoms

ScienceDaily (June 16, 2012) — A link between unconscious conflicts and conscious anxiety disorder symptoms have been shown, lending empirical support to psychoanalysis.

An experiment that Sigmund Freud could never have imagined 100 years ago may help lend scientific support for one of his key theories, and help connect it with current neuroscience.

June 16 at the 101st Annual Meeting of the American Psychoanalytic Association, a University of Michigan professor who has spent decades applying scientific methods to the study of psychoanalysis will present new data supporting a causal link between the psychoanalytic concept known as unconscious conflict, and the conscious symptoms experienced by people with anxiety disorders such as phobias.

Howard Shevrin, Ph.D., emeritus professor of psychology in the U-M Medical School's Department of Psychiatry, will present data from experiments performed in U-M's Ormond and Hazel Hunt Laboratory.

The research involved 11 people with anxiety disorders who each received a series of psychoanalytically oriented diagnostic sessions conducted by a psychoanalyst.

From these interviews the psychoanalysts inferred what underlying unconscious conflict might be causing the person's anxiety disorder. Words capturing the nature of the unconscious conflict were then selected from the interviews and used as stimuli in the laboratory. They also selected words related to each patient's experience of anxiety disorder symptoms. Although these words differed from patient to patient, results showed that they functioned in the same way.

These verbal stimuli were presented subliminally at one thousandth of a second, and supraliminally at 30 milliseconds. A control category of stimuli was added that had no relationship to the unconscious conflict or anxiety symptom. While the stimuli were presented to the patients, scalp electrodes record the brain responses to them.

In a previous experiment Shevrin had demonstrated that time-frequency features, a type of brain activity, showed that patients grouped the unconscious conflict stimuli together only when they were presented subliminally. But the conscious symptom-related stimuli showed the reverse pattern -- brain activity was better grouped together when patients viewed those words supraliminally.

"Only when the unconscious conflict words were presented unconsciously could the brain see them as connected," Shevrin notes. "What the analysts put together from the interview session made sense to the brain only unconsciously."

However, the experimental design in this first experiment did not allow for directly comparing the effect of the unconscious conflict stimuli on the conscious symptom stimuli.

To obtain evidence for that next level, the unconscious conflict stimuli were presented immediately prior to the conscious symptom stimuli and a new measurement was made, of the brain's own alpha wave frequency, at 8-13 cycles per second, that had been shown to inhibit various cognitive functions.

Highly significant correlations, suggesting an inhibitory effect, were obtained when the amount of alpha generated by the unconscious conflict stimuli were correlated with the amount of alpha associated with the conscious symptom alpha -- but only when the unconscious conflict stimuli were presented subliminally. No results were obtained when control stimuli replaced the symptom words. The fact that these findings are a function of inhibition suggests that from a psychoanalytic standpoint that repression might be involved.

"These results create a compelling case that unconscious conflicts cause or contribute to the anxiety symptoms the patient is experiencing," says Shevrin, who also holds an emeritus position in the Department of Psychology in U-M's College of Literature, Science and the Arts. "These findings and the interdisciplinary methods used -- which draw on psychoanalysis, cognitive psychology, and neuroscience -- demonstrate that it is possible to develop an interdisciplinary science drawing upon psychoanalytic theory."
...
http://www.sciencedaily.com/releases...0616145531.htm

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Saturday 16 June 2012

Secular Café: Why we (U.S.) don't beleive in science. [New Yorker]

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Why we (U.S.) don't beleive in science. [New Yorker]
Jun 16th 2012, 20:07

Quote:

Frontal Cortex
Jonah Lehrer on science, imagination, and the mind.


June 7, 2012
Why We Don't Believe In Science
Posted by Jonah Lehrer

Last week, Gallup announced the results of their latest survey on Americans and evolution. The numbers were a stark blow to high-school science teachers everywhere: forty-six per cent of adults said they believed that "God created humans in their present form within the last 10,000 years." Only fifteen per cent agreed with the statement that humans had evolved without the guidance of a divine power.

What's most remarkable about these numbers is their stability: these percentages have remained virtually unchanged since Gallup began asking the question, thirty years ago. In 1982, forty-four per cent of Americans held strictly creationist views, a statistically insignificant difference from 2012. Furthermore, the percentage of Americans that believe in biological evolution has only increased by four percentage points over the last twenty years.

Such poll data raises questions: Why are some scientific ideas hard to believe in? What makes the human mind so resistant to certain kinds of facts, even when these facts are buttressed by vast amounts of evidence?

A new study in Cognition, led by Andrew Shtulman at Occidental College, helps explain the stubbornness of our ignorance. As Shtulman notes, people are not blank slates, eager to assimilate the latest experiments into their world view. Rather, we come equipped with all sorts of naïve intuitions about the world, many of which are untrue. For instance, people naturally believe that heat is a kind of substance, and that the sun revolves around the earth. And then there's the irony of evolution: our views about our own development don't seem to be evolving.

This means that science education is not simply a matter of learning new theories. Rather, it also requires that students unlearn their instincts, shedding false beliefs the way a snake sheds its old skin.

To document the tension between new scientific concepts and our pre-scientific hunches, Shtulman invented a simple test. He asked a hundred and fifty college undergraduates who had taken multiple college-level science and math classes to read several hundred scientific statements. The students were asked to assess the truth of these statements as quickly as possible.

To make things interesting, Shtulman gave the students statements that were both intuitively and factually true ("The moon revolves around the Earth") and statements whose scientific truth contradicts our intuitions ("The Earth revolves around the sun").

As expected, it took students much longer to assess the veracity of true scientific statements that cut against our instincts. In every scientific category, from evolution to astronomy to thermodynamics, students paused before agreeing that the earth revolves around the sun, or that pressure produces heat, or that air is composed of matter. Although we know these things are true, we have to push back against our instincts, which leads to a measurable delay.

Read more http://www.newyorker.com/online/blog...#ixzz1xzM5WHMA

....
http://www.newyorker.com/online/blog...e-science.html

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Secular Café: Voyager headed into Interstellar Space

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Voyager headed into Interstellar Space
Jun 16th 2012, 12:13

Quote:

Data from NASA's Voyager 1 Point to Interstellar Future

ScienceDaily (June 15, 2012) — Data from NASA's Voyager 1 spacecraft indicate that the venerable deep-space explorer has encountered a region in space where the intensity of charged particles from beyond our solar system has markedly increased. Voyager scientists looking at this rapid rise draw closer to an inevitable but historic conclusion -- that humanity's first emissary to interstellar space is on the edge of our solar system.

"The laws of physics say that someday Voyager will become the first human-made object to enter interstellar space, but we still do not know exactly when that someday will be," said Ed Stone, Voyager project scientist at the California Institute of Technology in Pasadena. "The latest data indicate that we are clearly in a new region where things are changing more quickly. It is very exciting. We are approaching the solar system's frontier."

The data making the 16-hour-38 minute, 11.1-billion-mile (17.8-billion-kilometer), journey from Voyager 1 to antennas of NASA's Deep Space Network on Earth detail the number of charged particles measured by the two High Energy telescopes aboard the 34-year-old spacecraft. These energetic particles were generated when stars in our cosmic neighborhood went supernova.

"From January 2009 to January 2012, there had been a gradual increase of about 25 percent in the amount of galactic cosmic rays Voyager was encountering," said Stone. "More recently, we have seen very rapid escalation in that part of the energy spectrum. Beginning on May 7, the cosmic ray hits have increased five percent in a week and nine percent in a month."

This marked increase is one of a triad of data sets which need to make significant swings of the needle to indicate a new era in space exploration. The second important measure from the spacecraft's two telescopes is the intensity of energetic particles generated inside the heliosphere, the bubble of charged particles the sun blows around itself. While there has been a slow decline in the measurements of these energetic particles, they have not dropped off precipitously, which could be expected when Voyager breaks through the solar boundary.
....
http://www.sciencedaily.com/releases...0615114827.htm

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Secular Café: Water alkalinity?

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Water alkalinity?
Jun 16th 2012, 08:53

It seems that everything I post is just me knowing nothing, and me asking for answers, and I am going to have to do so again. I was at the local shop down the street with my neighbor, because we were thirsty after playing a game of soccer. I grabbed the first bottle I saw but my friend browsed through every brand of water. I asked what he was doing, when he replied that he was checking the water's alkalinity. I, as usual being quite confused, asked him why, and he said that there were significant health benefits, if the water's alkalinity was just below 8 on the pH scale, and apparently the same applies for food.
I asked what the health benefits he was talking about, and he never gave me an answer.
Did he just not know the reasons that slightly alkaline water is good, or we're there none to start with?

P.S: I promise that my next thread will actually be on a topic that I know something about.

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Secular Café: Hypnotism: What are the facts?

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Hypnotism: What are the facts?
Jun 16th 2012, 08:11

Hypnotism is a topic that I have no knowledge on, what so ever, and when it came up in conversation, (an arguements between two of my friends) I couldnt give my opinion, plainly because I didn't know the facts. Hypnotism, as I and this thread are concerned,could be anything from tapes that you play when you're sleeping (e.g.: to quit smoking), to, 'you are getting very sleepy', followed by 'jump up and down and quack like a duck'. Is it pseudo science?
Just want to find out different facts and opinions.

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Thursday 14 June 2012

Secular Café: Rejected for a long time before being accepted

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Rejected for a long time before being accepted
Jun 14th 2012, 21:18

Some notable scientific hypotheses had been rejected for a long time before being accepted.


Meteorites

Over the centuries, various people have venerated various meteorites as sacred stones. In the middle of the Grand Mosque of Mecca, there is the Kaaba, and in it, there is the Black Stone. It is likely a meteorite.

Around 450 BCE in Athens, Anaxagoras noticed some meteorite falls and he concluded from them that the Sun and the stars are very hot rocks.

But in the 18th cy., many scientists refused to accept the existence of extraterrestrial rocks. 1982Metic..17Q.295W Page 295 - The Eighteenth Century Meteorite Controversy: Aspects and Episodes

But then (Wikipedia)L'Aigle (meteorite) happened.
Quote:

In the early afternoon of 26 April 1803 a meteorite shower of more than 3000 fragments fell upon the town of L'Aigle in Normandy (France). Upon hearing of this event the French Academy of Sciences sent the young scientist Jean-Baptiste Biot, to investigate that spectacular fall of stones. After painstaking work in the field he reported two kinds of evidence pointing to an extraterrestrial origin for the stones:
  • Physical evidence: the sudden appearance of many identical stones similar to other stones fallen from the sky in other places
  • Moral evidence: a large number of witnesses who saw a "rain of stones thrown by the meteor"

Source: M. Gounelle. The meteorite fall at L'Aigle on April 26th 1803 and the Biot report.

Thus making a convincing case for the extraterrestrial origin of meteorites.

Some UFOlogists have argued that the scientific community's skepticism about extraterrestrial spaceships is as wrong as its former skepticism about extraterrestrial rocks.


Geological catastrophes

There are numerous departures from strict geological uniformity that people have observed over the millennia. Floods, earthquakes, volcanic eruptions, landslides, meteorite impacts, ... But have there been catastrophes much larger than the ones that have been observed over the better-documented parts of humanity's history?

Lots of myths and legends would say yes, like various flood stories, and in the early 19th cy., many geologists believed that the geological record had been shaped by such catastrophes.

But in 1830 - 1833, Charles Lyell published his big book Principles of Geology, subtitled "An attempt to explain the former changes of the Earth's surface by reference to causes now in operation". Not only was he usually very successful, his work made catastrophism seem like pulling rabbits out of hats.

But over the 20th cy., geologists came to recognize that these backward-extrapolated mechanisms coexisted with various catastrophes much bigger than any known from reliable history, like large glacial-dam-break floods and large volcanic eruptions and large meteorite impacts. They did so not from grandiose philosophical arguments, but on empirical grounds. They discovered that these large catastrophes were the best fits to their data.


Continental drift

For over 4 centuries, various people have noted that South America fits into Africa, and some of them have proposed that Africa and South America had drifted apart. The first to develop the idea in detail was Alfred Wegener in 1912, showing that it can account for various geological and biogeographical similarities.

However, his proposed mechanism for continents drifting was very implausible, and his fellow "drifters" did not do much better. How could a continent plow through oceanic crust? Furthermore, much of what Wegener cited as evidence could also be explained by now-sunken land bridges in the South Atlantic and Indian and Antarctic Oceans. That's not an impossibility; Beringia is a land bridge that is now under water.

But as geologists surveyed the oceans in the 1950's and after, they discovered no evidence of a sunken land bridge in the South Atlantic Ocean. It was as deep as other ocean floors, and its rocks were much like other ocean-floor rocks. But they discovered that the Atlantic Ocean had parallel magnetization stripes that were correlated with their distance from the Mid-Atlantic Ridge, and the rocks' ages were also correlated with that distance.

Evidence of climate variations had led some geologists to propose that the Earth's poles had wandered relative to its continents, and geologists looked for evidence of polar wandering in rocks' frozen magnetism. They indeed found it, and they also found that different continents had different polar-wander paths.

In the 1960's, geologists like J. Tuzo Wilson put the pieces of this puzzle together, and they came up with what they called "plate tectonics". The continents drifted, but they drifted along with nearby oceanic crust, rather than plowing through it. Oceanic crust is created at ridges like the Mid-Atlantic Ridge and destroyed in subduction zones.

Most recently, continental drift has been verified by VLBI observations, and by satellite observations, like with GPS satellites.

Geologists have also addressed a common criticism of continental drift, that it seemed to have started with the breakup of Pangaea, making the last 150 million years rather exceptional. They have found evidence of continental drift going back at least 3 billion years, meaning that the last 150 million years do not have exceptional continent behavior.


Endosymbiosis

That was first proposed by Konstantin Mereschkowski in 1905, and it was proposed off-and-on until Lynn Margulis revived it in 1967. For a long time, a common theory of the origin of eukaryotic cells is that they developed a sort of bubble around their genetic material, with some bits of genetic material getting their own bubbles. This is the "autogenous" theory, of a cyanobacterium developing into a "uralga" (JSTOR: Taxon, Vol. 25, No. 4 (Aug., 1976), pp. 377-390).

Back to Lynn Margulis.
On the origin of mitosing cells | Mendeley
On the origin of mitosing cells [J Theor Biol. 1967] - PubMed - NCBI
She was married to Carl Sagan at the time, thus her last name in the paper. She proposed that mitochondria, chloroplasts, and flagella were all descended from various prokaryotes, like chloroplasts from cyanobacteria.

It was rather controversial at the time, but biologists were developing the ability to sequence genes as well as proteins, and they discovered that genes of mitochondria and chloroplasts are much closer to prokaryotes' ones than their cell nucleus's counterparts. So by the early 1980's, their endosymbiosis had become widely accepted, and that conclusion became stronger and stronger as the years went by and biologists became better at sequencing genes. In fact, biologists have identified the closest relatives of mitochondria: some alpha-proteobacteria.

Hpwever, the hypothesis of the endosymbiotic origin of flagella has not gotten much acceptance, though the eukaryotic flagellum's origin is still not very well understood.


Transposons: "jumping genes"

Barbara McClintock first discovered them in 1948 as a result of her experiments with cross-breeding American corn (maize). However, her colleagues could not understand her work very well, and she stopped publishing it. But when her colleagues discovered transposons in bacteria and yeast in the late 1960's, they discovered that she had been there first.


Chemiosmotic biological energy metabolism

Around 1960, biologists studying energy metabolism faced a quandary. They knew of two parts of it, but they could not figure out how they were coupled.

The first part of it is electron-transfer systems. For combining food molecules with oxygen, electrons are extracted from those molecules and sent down a "respiratory chain" to extract their energy. At the end, they are combined with oxygen and hydrogen ions to make water. Photosynthesis involves similar electron transfer systems, though with electrons coming from water molecules and the like, and getting energized by photons.

The second part of it is ATP, adenosine triphosphate. This RNA nucleotide gets extra phosphates attached to it to store energy; the energy resides in the phosphate-phosphate (pyrophosphate) bonds. This energy is then tapped for doing various biosynthesis reactions, muscle action, and the like.

How were they coupled? Many biologists thought that there was some chemical intermediate, though they could not find that intermediate. But in 1961, Peter Mitchell proposed his chemiosmotic hypothesis. It states that there is a physical intermediate instead of a chemical one, that electron-transfer systems push hydrogen ions outside of the cell's membrane. They can then return in a process that assembles ATP molecules.

This hypothesis was not widely accepted at first, but over the years biologists continued to fail to discover that chemical intermediate. However, they discovered a lot of things that were most consistent with chemiosmosis, like the ATP-assembling molecule, ATP synthase. By the mid 1970's, it was widely accepted, and in 1978, Peter Mitchell got a Nobel Prize in Chemistry for it.

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Secular Café: Cave Paintings perhaps by Neanderthals

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Cave Paintings perhaps by Neanderthals
Jun 14th 2012, 20:42

Quote:

New Dating Puts Cave Art in the Age of Neanderthals
By JOHN NOBLE WILFORD
Published: June 14, 2012

Stone Age artists were painting red disks, handprints, clublike symbols and geometric patterns on European cave walls long before previously thought, in some cases more than 40,000 years ago, scientists reported on Thursday, after completing more reliable dating tests that raised a possibility that Neanderthals were the artists.
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Pedro Saura/Agence France-Presse — Getty Images

Hand stencils at the El Castillo Cave in Spain have been dated to have been created earlier than 37,300 years ago, making them the oldest cave paintings in Europe.
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A more likely situation, the researchers said, is that the art — 50 samples from 11 caves in northwestern Spain — was created by anatomically modern humans fairly soon after their arrival in Europe.

The findings seem to put an exclamation point to a run of recent discoveries: direct evidence from fossils that Homo sapiens populations were living in England 41,500 to 44,200 years ago and in Italy 43,000 to 45,000 years ago, and that they were making flutes in German caves about 42,000 years ago. Then there is the new genetic evidence of modern human-Neanderthal interbreeding, suggesting a closer relationship than had been generally thought.

The successful application of a newly refined uranium-thorium dating technique is also expected to send other scientists to other caves to see if they can reclaim prehistoric bragging rights.

In the new research, an international team led by Alistair W. G. Pike of the University of Bristol in England determined that the red disk in the cave known as El Castillo was part of the earliest known wall decorations, at a minimum of 40,800 years old. That makes it the earliest cave art found so far in Europe, perhaps 4,000 years older than the paintings at Grotte Chauvet in France.

The handprints common at several of the Spanish caves were stencils, probably made by blowing pigment on a hand placed against the cave wall. The oldest example, at El Castillo, proved to be at least 37,300 years old, which the scientists said "considerably increases the antiquity of this motif and implies that depictions of the human hand were among the oldest art known in Europe."

At many-chambered Altamira, its splendor discovered in the 19th century, the researchers obtained a date of at least 35,600 years for a red club-shaped symbol. Archaeologists said this indicated that Altamira's artistic tradition started about 10,000 years earlier than once estimated, and the cave appeared to have been revisited and painted many times over a span of 20,000 years.

In a report published online in the journal Science, Dr. Pike and his colleagues noted that the oldest dated art is "nonfigurative and monochrome (red), supporting the notion that the earliest expression of art in Western Europe was less concerned with animal depiction and characterized by red dots, disks, line and hand stencils." The more stunning murals of bison and horses came gradually, later.

Although the early dates coincide with recent evidence of a Homo sapiens presence in Europe, the scientists wrote that because 40,800 is only a minimum age, "it cannot be ruled out that the earliest paintings were symbolic expressions of the Neanderthals," who were living in that part of Spain until at least 42,000 years ago.
....
http://www.nytimes.com/2012/06/15/sc...pagewanted=all

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Wednesday 13 June 2012

Secular Café: Bonobo Genome fully decoded

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Bonobo Genome fully decoded
Jun 13th 2012, 21:50

Quote:

Bonobo's genetic code laid bare
Jonathan Amos By Jonathan Amos Science correspondent, BBC News


Scientists have decoded the bonobo genome, the biochemical instructions in the ape's cells that guide the building and maintenance of the animal's body.

It is the last great ape to have its DNA sequence laid bare, following the chimpanzee, orang-utan and gorilla.

Comparisons of all their codes, including the human genome, will shed new light on the biology and evolution of these closely related species.

The sequencing and analysis work is reported in the journal Nature.

It was undertaken by an international team led from the Max Planck Institute (MPI) for Evolutionary Anthropology in Leipzig, Germany.

The samples for study were taken from a female bonobo known as Ulindi which resides in Leipzig zoo.

Bonobos (Pan paniscus), together with chimpanzees (Pan troglodytes), are the closest living relatives of humans.

If one compares the DNA "letters" in the sequences of all three species, there is only a 1.3% difference between humans and their ape cousins.

The separation between the bonobo and the chimp is smaller still. Only four letters in every thousand is changed.

"Based on the differences that we observe between the genomes, one can actually estimate when the last common ancestor between these species lived," explained MPI's Kay Prufer.

"And between chimpanzees and bonobos that is maybe a million years in the past. For the chimps, bonobos, and humans - the common ancestor of all three lived somewhere around four to five million years ago," he told the BBC's Science In Action programme.
....
http://www.bbc.co.uk/news/science-environment-18430420

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Secular Café: Vanillia is the most erotic scent

Secular Café
Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Vanillia is the most erotic scent
Jun 13th 2012, 17:31

(Not loaded: VVMqIhMh6RI)

:D

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Secular Café: Did humans originate from two parts of the world?

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Did humans originate from two parts of the world?
Jun 13th 2012, 17:24

I know youll say humans crossed through the oceans during the ice age but..


The Native Americans are generally known to have a darker skin color than Cacasion people. The thing that makes me laugh is that it is colder in Canada than Europe. And according to evolution the hotter the climate the darker the skin.

So then the Native Americans must have moved up from the south (central american area) all the way to the North. Well I always thought that they moved down from Siberia.... So their skin must have gotten darker down- not the opposite.

If scientists say we orginated from Ethiopia they have proof over our skeletal remains. Now the amazon contains primates. But has alot of soil buried underneath unlike where we found our ancestors in the desert of Ethiopia.
The primates found in Amazon are extremely similar to the ones found in Africa.

And get this! Pangeda- the massive continent. Africa was attached to Brazil back then. So the same animals lived in the same geographical area..... Hence the same primates existed but split up in very similar eco-systems.


Also it makes me laugh how we crossed the glaciers. I mean how did we cross hundreds of miles over tundra. Were we smart enough to make camps.....

Do you think Im stupid, missing info or possibly correct??

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Tuesday 12 June 2012

Secular Café: Your Latest Science Book Read and Your Review

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
Your Latest Science Book Read and Your Review
Jun 12th 2012, 22:36

I though this might be a good on-going thread.

I just finished reading "Plant of Viruses" by Carl Zimmer
http://www.amazon.com/A-Planet-Virus.../dp/0226983358

which I picked up as a free ebook a while back. I loved it. 4/5 stars.

He really makes you understand that viruses are EVERYWHERE including having integrated their DNA into our DNA. We really do live in a sea of viruses and may have even evolved from viruses. The last chapter in his book is the mimivirus which is a mega-sized virus that more or less emulates a bacteria.

I highly recommend this book for anyone interested in the topic.

Now, What Science book have YOU read recently? and what did you think of it?

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Secular Café: New Evidence for Younger Dryas Boundary hypothesis

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New Evidence for Younger Dryas Boundary hypothesis
Jun 12th 2012, 12:20

Quote:

New Evidence Supports Theory of Extraterrestrial Impact

ScienceDaily (June 11, 2012) — An 18-member international team of researchers that includes James Kennett, professor of earth science at UC Santa Barbara, has discovered melt-glass material in a thin layer of sedimentary rock in Pennsylvania, South Carolina, and Syria. According to the researchers, the material -- which dates back nearly 13,000 years -- was formed at temperatures of 1,700 to 2,200 degrees Celsius (3,100 to 3,600 degrees Fahrenheit), and is the result of a cosmic body impacting Earth.

These new data are the latest to strongly support the controversial Younger Dryas Boundary (YDB) hypothesis, which proposes that a cosmic impact occurred 12,900 years ago at the onset of an unusual cold climatic period called the Younger Dryas. This episode occurred at or close to the time of major extinction of the North American megafauna, including mammoths and giant ground sloths; and the disappearance of the prehistoric and widely distributed Clovis culture. The researchers' findings appear June 11 in the Proceedings of the National Academy of Sciences.

"These scientists have identified three contemporaneous levels more than 12,000 years ago, on two continents yielding siliceous scoria-like objects (SLO's)," said H. Richard Lane, program director of National Science Foundation's Division of Earth Sciences, which funded the research. "SLO's are indicative of high-energy cosmic airbursts/impacts, bolstering the contention that these events induced the beginning of the Younger Dryas. That time was a major departure in biotic, human and climate history."

Morphological and geochemical evidence of the melt-glass confirms that the material is not cosmic, volcanic, or of human-made origin. "The very high temperature melt-glass appears identical to that produced in known cosmic impact events such as Meteor Crater in Arizona, and the Australasian tektite field," said Kennett.

"The melt material also matches melt-glass produced by the Trinity nuclear airburst of 1945 in Socorro, New Mexico," he continued. "The extreme temperatures required are equal to those of an atomic bomb blast, high enough to make sand melt and boil."

The material evidence supporting the YDB cosmic impact hypothesis spans three continents, and covers nearly one-third of the planet, from California to Western Europe, and into the Middle East. The discovery extends the range of evidence into Germany and Syria, the easternmost site yet identified in the northern hemisphere. The researchers have yet to identify a limit to the debris field of the impact.

"Because these three sites in North America and the Middle East are separated by 1,000 to 10,000 kilometers, there were most likely three or more major impact/airburst epicenters for the YDB impact event, likely caused by a swarm of cosmic objects that were fragments of either a meteorite or comet," said Kennett.
....
http://www.sciencedaily.com/releases...0611193657.htm

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Secular Café: How Life Crosses Oceans

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Serious discussion of science, skepticism, evolution, pseudoscience, and the paranormal
How Life Crosses Oceans
Jun 12th 2012, 10:27

I'm sure you've heard of the Japanese boat dock torn loose by the tsunami and now drifting ashore in Oregon across the Pacific Ocean. I LOVE it. Clams found a way to cross the ocean. :) Everyone is in an uproar about "invasive species" but isn't this really a perfect example of how life survives and evolves.

Quote:

Floating dock from Japan carries potential invasive species

When debris from the 2011 earthquake and tsunami in Japan began making its way toward the West Coast of the United States, there were fears of possible radiation and chemical contamination as well as costly cleanup.

But a floating dock that unexpectedly washed ashore in Newport this week and has been traced back to the Japanese disaster has brought with it a completely different threat – invasive species.

Scientists at Oregon State University's Hatfield Marine Science Center said the cement float contains about 13 pounds of organisms per square foot. Already they have gathered samples of 4–6 species of barnacles, starfish, urchins, anemones, amphipods, worms, mussels, limpets, snails, solitary tunicates and algae – and there are dozens of species overall.

"This float is an island unlike any transoceanic debris we have ever seen," said John Chapman, an OSU marine invasive species specialist. "Drifting boats lack such dense fouling communities, and few of these species are already on this coast. Nearly all of the species we've looked at were established on the float before the tsunami; few came after it was at sea."

Chapman said it was "mind-boggling" how these organisms survived their trek across the Pacific Ocean. The low productivity of open-ocean waters should have starved at least some of the organisms, he said.

"It is as if the float drifted over here by hugging the coasts, but that is of course impossible," Chapman said. "Life on the open ocean, while drifting, may be more gentle for these organisms than we initially suspected. Invertebrates can survive for months without food and the most abundant algae species may not have had the normal compliment of herbivores. Still, it is surprising."

Jessica Miller, an Oregon State University marine ecologist, said that a brown algae (Undaria pinnatifida), commonly called wakame, was present across most of the dock – and plainly stood out when she examined it in the fading evening light. She said the algae is native to the western Pacific Ocean in Asia, and has invaded several regions including southern California. The species identification was confirmed by OSU phycologist Gayle Hansen.
....
http://environmentalresearchweb.org/...yournews/49899

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